IL_9Q1Q_193
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCCUUU*AUUCG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_193 not in the Motif Atlas
- Homologous match to IL_9H3G_164
- Geometric discrepancy: 0.169
- The information below is about IL_9H3G_164
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31545.4
- Basepair signature
- cWW-L-R-L-cWW-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|9|U|116
9Q1Q|1|9|C|117
9Q1Q|1|9|C|118
9Q1Q|1|9|U|119
9Q1Q|1|9|U|120
9Q1Q|1|9|U|121
*
9Q1Q|1|9|A|343
9Q1Q|1|9|U|344
9Q1Q|1|9|U|345
9Q1Q|1|9|C|346
9Q1Q|1|9|G|347
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain II
- 40S ribosomal protein S8
Coloring options: