IL_9Q1Q_202
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9Q1Q|1|9|U|361, 9Q1Q|1|9|C|399, 9Q1Q|1|9|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_202 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.1375
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q1Q|1|9|U|359
9Q1Q|1|9|A|360
9Q1Q|1|9|U|361
9Q1Q|1|9|C|362
9Q1Q|1|9|A|363
9Q1Q|1|9|A|364
*
9Q1Q|1|9|U|396
9Q1Q|1|9|G|397
9Q1Q|1|9|A|398
9Q1Q|1|9|C|399
9Q1Q|1|9|C|400
9Q1Q|1|9|A|401
9Q1Q|1|9|C|402
9Q1Q|1|9|G|403
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain II
- 40S ribosomal protein S8
- Chain LL
- Small ribosomal subunit protein uS17
- Chain XX
- 40S ribosomal protein S23
Coloring options: