IL_9Q1Q_233

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9Q1Q|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|G|952
9Q1Q|1|9|C|953
9Q1Q|1|9|U|954
9Q1Q|1|9|A|955
9Q1Q|1|9|G|956
*
9Q1Q|1|9|C|967
9Q1Q|1|9|U|968
9Q1Q|1|9|U|969
9Q1Q|1|9|G|970
9Q1Q|1|9|G|971
9Q1Q|1|9|A|972
9Q1Q|1|9|C|973
9Q1Q|1|9|C|974

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S3a

Chain OO

Small ribosomal subunit protein uS11