IL_9Q1Q_236
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9Q1Q|1|9|C|1153, 9Q1Q|1|9|U|1155, 9Q1Q|1|9|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_236 not in the Motif Atlas
- Homologous match to IL_9H3G_205
- Geometric discrepancy: 0.1823
- The information below is about IL_9H3G_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82706.5
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q1Q|1|9|C|1091
9Q1Q|1|9|G|1092
9Q1Q|1|9|A|1093
*
9Q1Q|1|9|U|1152
9Q1Q|1|9|C|1153
9Q1Q|1|9|U|1154
9Q1Q|1|9|U|1155
9Q1Q|1|9|U|1156
9Q1Q|1|9|G|1157
9Q1Q|1|9|G|1158
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain LL
- Small ribosomal subunit protein uS17
- Chain NN
- 40S ribosomal protein S13
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
- Chain bb
- 40S ribosomal protein S27
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