IL_9Q1Q_239
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1Q_239 not in the Motif Atlas
- Homologous match to IL_9PN5_194
- Geometric discrepancy: 0.1105
- The information below is about IL_9PN5_194
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9Q1Q|1|9|G|1168
9Q1Q|1|9|G|1169
9Q1Q|1|9|A|1170
9Q1Q|1|9|G|1171
9Q1Q|1|9|U|1172
9Q1Q|1|9|A|1173
9Q1Q|1|9|U|1174
9Q1Q|1|9|G|1175
*
9Q1Q|1|9|U|1186
9Q1Q|1|9|G|1187
9Q1Q|1|9|A|1188
9Q1Q|1|9|A|1189
9Q1Q|1|9|A|1190
9Q1Q|1|9|C|1191
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain XX
- 40S ribosomal protein S23
- Chain n
- eL41
Coloring options: