IL_9Q1Q_241

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAA*UU

Length

6 nucleotides

Bulged bases

9Q1Q|1|9|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_241 not in the Motif Atlas

Geometric match to IL_2GUN_002

Geometric discrepancy: 0.2575

The information below is about IL_2GUN_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9Q1Q|1|9|G|1206
9Q1Q|1|9|G|1207
9Q1Q|1|9|A|1208
9Q1Q|1|9|A|1209
*
9Q1Q|1|9|U|1690
9Q1Q|1|9|U|1692

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain aa

eS26