IL_9Q1Q_255

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_255 not in the Motif Atlas

Homologous match to IL_9PN5_210

Geometric discrepancy: 0.1419

The information below is about IL_9PN5_210

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9Q1Q|1|9|U|1347
9Q1Q|1|9|G|1348
9Q1Q|1|9|G|1349
*
9Q1Q|1|9|C|1380
9Q1Q|1|9|G|1381
9Q1Q|1|9|A|1382

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain AA

40S ribosomal protein SA

Chain CC

40S ribosomal protein S2

Chain DD

Small ribosomal subunit protein uS3

Chain RR

40S ribosomal protein S17