IL_9Q1Q_260

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1Q_260 not in the Motif Atlas

Geometric match to IL_8GLP_039

Geometric discrepancy: 0.1056

The information below is about IL_8GLP_039

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q1Q|1|9|A|1537
9Q1Q|1|9|C|1538
9Q1Q|1|9|U|1539
*
9Q1Q|1|9|A|1594
9Q1Q|1|9|U|1595
9Q1Q|1|9|U|1596

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain SS

40S ribosomal protein S18

Chain TT

Small ribosomal subunit protein eS19

Chain ZZ

40S ribosomal protein S25