IL_9Q1S_009
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 9Q1S|1|5|G|119, 9Q1S|1|5|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_009 not in the Motif Atlas
- Geometric match to IL_8GLP_287
- Geometric discrepancy: 0.1331
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
9Q1S|1|5|C|118
9Q1S|1|5|G|119
9Q1S|1|5|A|120
9Q1S|1|5|A|121
9Q1S|1|5|U|122
*
9Q1S|1|5|A|147
9Q1S|1|5|A|148
9Q1S|1|5|A|149
9Q1S|1|5|U|150
9Q1S|1|5|G|151
9Q1S|1|5|U|152
9Q1S|1|5|G|153
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- Large ribosomal subunit protein eL8
- Chain N
- 60S ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
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