IL_9Q1S_024

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_024 not in the Motif Atlas

Homologous match to IL_8GLP_025

Geometric discrepancy: 0.2386

The information below is about IL_8GLP_025

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q1S|1|5|G|462
9Q1S|1|5|A|463
9Q1S|1|5|G|464
*
9Q1S|1|5|C|691
9Q1S|1|5|A|692
9Q1S|1|5|C|693

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein eL6

Chain r

60S ribosomal protein L28