IL_9Q1S_065
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGUAA*UAAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_065 not in the Motif Atlas
- Homologous match to IL_8GLP_291
- Geometric discrepancy: 0.1902
- The information below is about IL_8GLP_291
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_46203.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
9Q1S|1|5|C|1732
9Q1S|1|5|G|1733
9Q1S|1|5|G|1734
9Q1S|1|5|U|1735
9Q1S|1|5|A|1736
9Q1S|1|5|A|1737
*
9Q1S|1|5|U|1792
9Q1S|1|5|A|1793
9Q1S|1|5|A|1794
9Q1S|1|5|A|1795
9Q1S|1|5|U|1796
9Q1S|1|5|G|1797
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L7
- Chain I
- Ribosomal protein L10
- Chain S
- eL20
- Chain T
- 60S ribosomal protein L21
Coloring options: