IL_9Q1S_098
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9Q1S|1|5|U|2661, 9Q1S|1|5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|U|2656
9Q1S|1|5|G|2657
9Q1S|1|5|G|2658
9Q1S|1|5|A|2659
9Q1S|1|5|A|2660
9Q1S|1|5|U|2661
9Q1S|1|5|G|2662
*
9Q1S|1|5|C|2672
9Q1S|1|5|G|2673
9Q1S|1|5|A|2674
9Q1S|1|5|G|2675
9Q1S|1|5|A|2676
9Q1S|1|5|G|2677
9Q1S|1|5|A|2678
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain NN
- 40S ribosomal protein S13
- Chain R
- 60S ribosomal protein L19
- Chain Z
- 60S ribosomal protein L27
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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