IL_9Q1S_178
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUU*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_178 not in the Motif Atlas
- Geometric match to IL_4ZC7_004
- Geometric discrepancy: 0.1923
- The information below is about IL_4ZC7_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_01003.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 240
Unit IDs
9Q1S|1|9|G|108
9Q1S|1|9|U|109
9Q1S|1|9|U|110
*
9Q1S|1|9|G|351
9Q1S|1|9|U|352
9Q1S|1|9|C|353
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain EE
- 40S ribosomal protein S4
- Chain II
- 40S ribosomal protein S8
- Chain LL
- Small ribosomal subunit protein uS17
Coloring options: