IL_9Q1S_189

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_189 not in the Motif Atlas

Homologous match to IL_9PN5_157

Geometric discrepancy: 0.2341

The information below is about IL_9PN5_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77718.1

Basepair signature

cWW-L-cSW-cWW

Number of instances in this motif group

11

Unit IDs

9Q1S|1|9|C|317
9Q1S|1|9|A|318
9Q1S|1|9|C|319
9Q1S|1|9|G|320
*
9Q1S|1|9|C|331
9Q1S|1|9|G|332
9Q1S|1|9|G|333

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

Small ribosomal subunit protein eS6