IL_9Q1S_207

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_207 not in the Motif Atlas

Homologous match to IL_9PN5_176

Geometric discrepancy: 0.1075

The information below is about IL_9PN5_176

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.4

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

21

Unit IDs

9Q1S|1|9|C|676
9Q1S|1|9|G|677
9Q1S|1|9|U|678
9Q1S|1|9|A|679
9Q1S|1|9|G|680
*
9Q1S|1|9|U|1025
9Q1S|1|9|C|1026
9Q1S|1|9|A|1027
9Q1S|1|9|A|1028
9Q1S|1|9|G|1029

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LL

Small ribosomal subunit protein uS17

Chain NN

40S ribosomal protein S13

Chain WW

40S ribosomal protein S15a

Chain XX

40S ribosomal protein S23