IL_9Q1S_219
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_219 not in the Motif Atlas
- Homologous match to IL_9PN5_186
- Geometric discrepancy: 0.1254
- The information below is about IL_9PN5_186
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9Q1S|1|9|G|942
9Q1S|1|9|U|943
9Q1S|1|9|A|944
9Q1S|1|9|U|945
*
9Q1S|1|9|A|981
9Q1S|1|9|G|982
9Q1S|1|9|A|983
9Q1S|1|9|C|984
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain BB
- 40S ribosomal protein S3a
- Chain OO
- Small ribosomal subunit protein uS11
- Chain aa
- eS26
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