IL_9Q1S_219

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|G|942
9Q1S|1|9|U|943
9Q1S|1|9|A|944
9Q1S|1|9|U|945
*
9Q1S|1|9|A|981
9Q1S|1|9|G|982
9Q1S|1|9|A|983
9Q1S|1|9|C|984

Current chains

Chain 9

18S rRNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain BB

40S ribosomal protein S3a

Chain OO

Small ribosomal subunit protein uS11

Chain aa

eS26