IL_9Q1S_224
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_224 not in the Motif Atlas
- Homologous match to IL_9PN5_192
- Geometric discrepancy: 0.2467
- The information below is about IL_9PN5_192
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9Q1S|1|9|C|1098
9Q1S|1|9|G|1099
9Q1S|1|9|A|1100
9Q1S|1|9|U|1101
*
9Q1S|1|9|G|1131
9Q1S|1|9|C|1132
9Q1S|1|9|A|1133
9Q1S|1|9|G|1134
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain AA
- 40S_SA_C domain-containing protein
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- 40S ribosomal protein S13
- Chain RR
- 40S ribosomal protein S17
- Chain aa
- eS26
- Chain bb
- 40S ribosomal protein S27
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