IL_9Q1S_227

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_227 not in the Motif Atlas

Homologous match to IL_9PN5_194

Geometric discrepancy: 0.1151

The information below is about IL_9PN5_194

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

7

Unit IDs

9Q1S|1|9|G|1168
9Q1S|1|9|G|1169
9Q1S|1|9|A|1170
9Q1S|1|9|G|1171
9Q1S|1|9|U|1172
9Q1S|1|9|A|1173
9Q1S|1|9|U|1174
9Q1S|1|9|G|1175
*
9Q1S|1|9|U|1186
9Q1S|1|9|G|1187
9Q1S|1|9|A|1188
9Q1S|1|9|A|1189
9Q1S|1|9|A|1190
9Q1S|1|9|C|1191

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain XX

40S ribosomal protein S23

Chain n

eL41