IL_9Q1S_228
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAA*UU
- Length
- 6 nucleotides
- Bulged bases
- 9Q1S|1|9|G|1207
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_228 not in the Motif Atlas
- Geometric match to IL_2O3X_001
- Geometric discrepancy: 0.2212
- The information below is about IL_2O3X_001
- Detailed Annotation
- Stack and bulge
- Broad Annotation
- Stack and bulge
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9Q1S|1|9|G|1206
9Q1S|1|9|G|1207
9Q1S|1|9|A|1208
9Q1S|1|9|A|1209
*
9Q1S|1|9|U|1690
9Q1S|1|9|U|1692
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain CC
- 40S ribosomal protein S2
- Chain aa
- eS26
Coloring options: