IL_9Q1S_229
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9Q1S|1|9|C|1215, 9Q1S|1|9|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_229 not in the Motif Atlas
- Homologous match to IL_9H3G_212
- Geometric discrepancy: 0.1581
- The information below is about IL_9H3G_212
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.15
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 24
Unit IDs
9Q1S|1|9|A|1214
9Q1S|1|9|C|1215
9Q1S|1|9|C|1216
9Q1S|1|9|A|1217
*
9Q1S|1|9|U|1681
9Q1S|1|9|C|1682
9Q1S|1|9|C|1683
9Q1S|1|9|C|1684
9Q1S|1|9|U|1685
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV IRES
- Chain FF
- Small ribosomal subunit protein uS7
- Chain QQ
- Small ribosomal subunit protein uS9
- Chain aa
- eS26
- Chain cc
- 40S ribosomal protein S28
Coloring options: