IL_9Q1S_232

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q1S_232 not in the Motif Atlas

Homologous match to IL_9H3G_215

Geometric discrepancy: 0.217

The information below is about IL_9H3G_215

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q1S|1|9|G|1270
9Q1S|1|9|C|1271
9Q1S|1|9|C|1272
*
9Q1S|1|9|G|1510
9Q1S|1|9|U|1511
9Q1S|1|9|C|1512

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

Small ribosomal subunit protein eS10

Chain PP

Small ribosomal subunit protein uS19

Chain dd

40S ribosomal protein S29