IL_9Q1S_240

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9Q1S|1|9|U|1494, 9Q1S|1|9|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|U|1333
9Q1S|1|9|G|1334
9Q1S|1|9|G|1335
*
9Q1S|1|9|U|1492
9Q1S|1|9|C|1493
9Q1S|1|9|U|1494
9Q1S|1|9|G|1495
9Q1S|1|9|U|1496
9Q1S|1|9|G|1497
9Q1S|1|9|A|1498

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

Small ribosomal subunit protein uS3

Chain KK

Small ribosomal subunit protein eS10

Chain UU

uS10

Chain dd

40S ribosomal protein S29