IL_9Q1S_240
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9Q1S|1|9|U|1494, 9Q1S|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q1S_240 not in the Motif Atlas
- Homologous match to IL_9H3G_221
- Geometric discrepancy: 0.1421
- The information below is about IL_9H3G_221
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09439.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9Q1S|1|9|U|1333
9Q1S|1|9|G|1334
9Q1S|1|9|G|1335
*
9Q1S|1|9|U|1492
9Q1S|1|9|C|1493
9Q1S|1|9|U|1494
9Q1S|1|9|G|1495
9Q1S|1|9|U|1496
9Q1S|1|9|G|1497
9Q1S|1|9|A|1498
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain DD
- Small ribosomal subunit protein uS3
- Chain KK
- Small ribosomal subunit protein eS10
- Chain UU
- uS10
- Chain dd
- 40S ribosomal protein S29
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