IL_9Q2M_173
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 9Q2M|1|7|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2M_173 not in the Motif Atlas
- Geometric match to IL_8QYX_171
- Geometric discrepancy: 0.122
- The information below is about IL_8QYX_171
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9Q2M|1|7|G|82
9Q2M|1|7|A|83
9Q2M|1|7|U|84
9Q2M|1|7|G|85
*
9Q2M|1|7|C|92
9Q2M|1|7|G|93
9Q2M|1|7|C|94
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 60S ribosomal protein L7
- Chain I
- Ribosomal protein L10
- Chain S
- eL20
- Chain T
- 60S ribosomal protein L21
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