IL_9Q2M_192
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9Q2M|1|9|U|285, 9Q2M|1|9|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2M_192 not in the Motif Atlas
- Homologous match to IL_9PN5_159
- Geometric discrepancy: 0.1409
- The information below is about IL_9PN5_159
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.7
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9Q2M|1|9|U|283
9Q2M|1|9|A|284
9Q2M|1|9|U|285
9Q2M|1|9|C|286
9Q2M|1|9|A|287
9Q2M|1|9|A|288
*
9Q2M|1|9|U|320
9Q2M|1|9|G|321
9Q2M|1|9|A|322
9Q2M|1|9|C|323
9Q2M|1|9|C|324
9Q2M|1|9|A|325
9Q2M|1|9|C|326
9Q2M|1|9|G|327
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain II
- 40S ribosomal protein S8
- Chain LL
- Small ribosomal subunit protein uS17
- Chain XX
- 40S ribosomal protein S23
Coloring options: