IL_9Q2M_205
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9Q2M|1|9|G|550, 9Q2M|1|9|A|552, 9Q2M|1|9|U|554, 9Q2M|1|9|U|555
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2M_205 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.223
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q2M|1|9|G|535
9Q2M|1|9|U|536
9Q2M|1|9|G|537
9Q2M|1|9|C|538
9Q2M|1|9|C|539
9Q2M|1|9|A|540
9Q2M|1|9|G|541
*
9Q2M|1|9|C|548
9Q2M|1|9|G|549
9Q2M|1|9|G|550
9Q2M|1|9|U|551
9Q2M|1|9|A|552
9Q2M|1|9|A|553
9Q2M|1|9|U|554
9Q2M|1|9|U|555
9Q2M|1|9|C|556
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 1
- NediV ORF
- Chain DD
- 40S ribosomal protein S3
- Chain EF
- Elongation factor 2
- Chain XX
- 40S ribosomal protein S23
- Chain ee
- Small ribosomal subunit protein eS30
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