IL_9Q2M_208

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_208 not in the Motif Atlas

Geometric match to IL_9AXU_025

Geometric discrepancy: 0.195

The information below is about IL_9AXU_025

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q2M|1|9|G|616
9Q2M|1|9|A|617
9Q2M|1|9|G|618
*
9Q2M|1|9|U|625
9Q2M|1|9|C|626
9Q2M|1|9|C|627

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS7

Chain WW

40S ribosomal protein S15a