IL_9Q2M_215

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGC*GAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_215 not in the Motif Atlas

Geometric match to IL_9PN5_192

Geometric discrepancy: 0.2179

The information below is about IL_9PN5_192

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9Q2M|1|9|C|723
9Q2M|1|9|C|724
9Q2M|1|9|G|725
9Q2M|1|9|C|726
*
9Q2M|1|9|G|754
9Q2M|1|9|A|755
9Q2M|1|9|G|756
9Q2M|1|9|G|757

Current chains

Chain 9

18S rRNA

Nearby chains

Chain HH

Small ribosomal subunit protein eS7

Chain R

60S ribosomal protein L19