IL_9Q2M_233
3D structure
- PDB id
- 9Q2M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2M_233 not in the Motif Atlas
- Geometric match to IL_8CRE_471
- Geometric discrepancy: 0.1701
- The information below is about IL_8CRE_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9Q2M|1|9|C|1076
9Q2M|1|9|G|1077
9Q2M|1|9|A|1078
9Q2M|1|9|U|1079
*
9Q2M|1|9|A|1163
9Q2M|1|9|G|1164
9Q2M|1|9|A|1165
9Q2M|1|9|G|1166
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- eL41
Coloring options: