IL_9Q2M_243

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_243 not in the Motif Atlas

Homologous match to IL_9PN5_199

Geometric discrepancy: 0.2797

The information below is about IL_9PN5_199

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9Q2M|1|9|G|1251
9Q2M|1|9|G|1252
*
9Q2M|1|9|C|1527
9Q2M|1|9|A|1528
9Q2M|1|9|C|1529

Current chains

Chain 9

18S rRNA

Nearby chains

Chain ET

Transfer RNA; tRNA

Chain PP

Small ribosomal subunit protein uS19

Chain PT

P site Ala-tRNA

Chain SS

40S ribosomal protein S18