IL_9Q2M_252

3D structure

PDB id

9Q2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF2, partial P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2M_252 not in the Motif Atlas

Homologous match to IL_9PN5_210

Geometric discrepancy: 0.1612

The information below is about IL_9PN5_210

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

67

Unit IDs

9Q2M|1|9|U|1363
9Q2M|1|9|G|1364
9Q2M|1|9|G|1365
*
9Q2M|1|9|C|1396
9Q2M|1|9|G|1397
9Q2M|1|9|A|1398

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain CC

40S ribosomal protein S2

Chain DD

40S ribosomal protein S3

Chain RR

40S ribosomal protein S17