IL_9Q2O_003

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2O_003 not in the Motif Atlas

Geometric match to IL_8GLP_257

Geometric discrepancy: 0.3863

The information below is about IL_8GLP_257

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75737.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9Q2O|1|1|C|1426
9Q2O|1|1|U|1427
9Q2O|1|1|C|1428
*
9Q2O|1|1|G|1440
9Q2O|1|1|A|1441
9Q2O|1|1|G|1442

Current chains

Chain 1

NediV IRES

Nearby chains