IL_9Q2O_014

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

9Q2O|1|5|G|119, 9Q2O|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|5|C|118
9Q2O|1|5|G|119
9Q2O|1|5|A|120
9Q2O|1|5|A|121
9Q2O|1|5|U|122
*
9Q2O|1|5|A|147
9Q2O|1|5|C|148
9Q2O|1|5|A|149
9Q2O|1|5|U|150
9Q2O|1|5|G|151
9Q2O|1|5|U|152
9Q2O|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

Large ribosomal subunit protein eL8

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35