IL_9Q2O_089

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9Q2O|1|5|A|2002, 9Q2O|1|5|G|2003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2O_089 not in the Motif Atlas

Geometric match to IL_1MMS_004

Geometric discrepancy: 0.3932

The information below is about IL_1MMS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.5

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9Q2O|1|5|G|2001
9Q2O|1|5|A|2002
9Q2O|1|5|G|2003
9Q2O|1|5|U|2004
9Q2O|1|5|G|2005
*
9Q2O|1|5|C|2014
9Q2O|1|5|U|2015
9Q2O|1|5|C|2016

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL10

Chain t

uL11