IL_9Q2O_132

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2O_132 not in the Motif Atlas

Geometric match to IL_8CRE_391

Geometric discrepancy: 0.1164

The information below is about IL_8CRE_391

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9Q2O|1|5|G|4135
9Q2O|1|5|C|4136
9Q2O|1|5|C|4137
*
9Q2O|1|5|G|4147
9Q2O|1|5|C|4148
9Q2O|1|5|C|4149

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein eL8

Chain Z

60S ribosomal protein L27