IL_9Q2O_159

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCCU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2O_159 not in the Motif Atlas

Geometric match to IL_9H3G_240

Geometric discrepancy: 0.2408

The information below is about IL_9H3G_240

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9Q2O|1|5|U|4885
9Q2O|1|5|C|4886
9Q2O|1|5|C|4887
9Q2O|1|5|U|4888
*
9Q2O|1|5|G|4931
9Q2O|1|5|U|4932
9Q2O|1|5|C|4933
9Q2O|1|5|A|4934

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6