IL_9Q2O_190

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2O_190 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.2737

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9Q2O|1|9|C|188
9Q2O|1|9|U|189
9Q2O|1|9|G|190
9Q2O|1|9|A|191
9Q2O|1|9|C|192
*
9Q2O|1|9|G|207
9Q2O|1|9|G|208
9Q2O|1|9|A|209
9Q2O|1|9|U|210
9Q2O|1|9|G|211

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

40S ribosomal protein S8