IL_9Q2O_195

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9Q2O|1|9|U|361, 9Q2O|1|9|C|399, 9Q2O|1|9|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|U|359
9Q2O|1|9|A|360
9Q2O|1|9|U|361
9Q2O|1|9|C|362
9Q2O|1|9|A|363
9Q2O|1|9|A|364
*
9Q2O|1|9|U|396
9Q2O|1|9|G|397
9Q2O|1|9|A|398
9Q2O|1|9|C|399
9Q2O|1|9|C|400
9Q2O|1|9|A|401
9Q2O|1|9|C|402
9Q2O|1|9|G|403

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

40S ribosomal protein S8

Chain LL

Small ribosomal subunit protein uS17

Chain XX

40S ribosomal protein S23