IL_9Q2O_227

3D structure

PDB id

9Q2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with A site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q2O|1|9|A|1042
9Q2O|1|9|G|1043
9Q2O|1|9|G|1044
9Q2O|1|9|U|1045
9Q2O|1|9|U|1046
9Q2O|1|9|C|1047
*
9Q2O|1|9|G|1071
9Q2O|1|9|U|1072
9Q2O|1|9|U|1073

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

60S ribosomal protein L8

Chain OO

Small ribosomal subunit protein uS11

Chain aa

eS26

Chain p

60S ribosomal protein L37a