IL_9Q2P_071

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_071 not in the Motif Atlas

Homologous match to IL_9PN5_040

Geometric discrepancy: 0.1466

The information below is about IL_9PN5_040

Detailed Annotation

Tandem non-canonical cWW pairs; U in syn

Broad Annotation

Tandem non-canonical cWW pairs; U in syn

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9Q2P|1|5|A|1746
9Q2P|1|5|U|1747
9Q2P|1|5|U|1748
9Q2P|1|5|A|1749
*
9Q2P|1|5|U|1781
9Q2P|1|5|U|1782
9Q2P|1|5|C|1783
9Q2P|1|5|U|1784

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein L5

Chain I

Ribosomal protein L10