IL_9Q2P_115

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

9Q2P|1|5|C|3701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_115 not in the Motif Atlas

Homologous match to IL_8GLP_116

Geometric discrepancy: 0.1462

The information below is about IL_8GLP_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55206.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9Q2P|1|5|C|3700
9Q2P|1|5|C|3701
9Q2P|1|5|A|3702
9Q2P|1|5|G|3703
*
9Q2P|1|5|C|3749
9Q2P|1|5|G|3750

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L8