IL_8GLP_116

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_116 not in the Motif Atlas

Homologous match to IL_8C3A_089

Geometric discrepancy: 0.067

The information below is about IL_8C3A_089

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8GLP|1|L5|C|3700
8GLP|1|L5|OMC|3701
8GLP|1|L5|A|3702
8GLP|1|L5|G|3703
*
8GLP|1|L5|C|3749
8GLP|1|L5|G|3750

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain S2

Small subunit ribosomal RNA; SSU rRNA