IL_9Q2P_118

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAU*GC

Length

6 nucleotides

Bulged bases

9Q2P|1|5|A|3711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_118 not in the Motif Atlas

Geometric match to IL_7A0S_028

Geometric discrepancy: 0.3673

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9Q2P|1|5|G|3710
9Q2P|1|5|A|3711
9Q2P|1|5|A|3712
9Q2P|1|5|U|3713
*
9Q2P|1|5|G|3740
9Q2P|1|5|C|3741

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA