IL_9Q2P_148

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_148 not in the Motif Atlas

Homologous match to IL_8GLP_316

Geometric discrepancy: 0.1999

The information below is about IL_8GLP_316

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

85

Unit IDs

9Q2P|1|5|A|4590
9Q2P|1|5|U|4591
9Q2P|1|5|C|4592
*
9Q2P|1|5|G|4618
9Q2P|1|5|U|4619
9Q2P|1|5|U|4620

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

Large ribosomal subunit protein uL14