IL_9Q2P_205
3D structure
- PDB id
- 9Q2P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9Q2P|1|9|A|628, 9Q2P|1|9|U|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2P_205 not in the Motif Atlas
- Homologous match to IL_9H3G_187
- Geometric discrepancy: 0.1675
- The information below is about IL_9H3G_187
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Q2P|1|9|G|611
9Q2P|1|9|U|612
9Q2P|1|9|G|613
9Q2P|1|9|C|614
9Q2P|1|9|C|615
9Q2P|1|9|A|616
9Q2P|1|9|G|617
*
9Q2P|1|9|C|624
9Q2P|1|9|G|625
9Q2P|1|9|G|626
9Q2P|1|9|U|627
9Q2P|1|9|A|628
9Q2P|1|9|A|629
9Q2P|1|9|U|630
9Q2P|1|9|U|631
9Q2P|1|9|C|632
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 1
- NediV ORF
- Chain AT
- Transfer RNA; tRNA
- Chain DD
- 40S ribosomal protein S3
- Chain XX
- 40S ribosomal protein S23
- Chain ee
- Small ribosomal subunit protein eS30
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