IL_9Q2P_211

3D structure

PDB id

9Q2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit ribosomal 80S elongation complex with eEF1A, A*/T Ala-tRNA, P site Ala-tRNA, E site Ala-tRNA on NediV ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2P_211 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1901

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9Q2P|1|9|C|745
9Q2P|1|9|U|749
*
9Q2P|1|9|A|794
9Q2P|1|9|A|795
9Q2P|1|9|G|796

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

40S ribosomal protein S4

Chain LL

Small ribosomal subunit protein uS17