IL_9Q2T_047

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9Q2T|1|5|C|1214, 9Q2T|1|5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_047 not in the Motif Atlas

Geometric match to IL_8GLP_043

Geometric discrepancy: 0.248

The information below is about IL_8GLP_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9Q2T|1|5|C|1082
9Q2T|1|5|U|1083
9Q2T|1|5|C|1084
*
9Q2T|1|5|G|1213
9Q2T|1|5|C|1214
9Q2T|1|5|C|1215
9Q2T|1|5|C|1216
9Q2T|1|5|G|1217

Current chains

Chain 5

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L7

Chain b

Large ribosomal subunit protein eL29