3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CUC*GCCCG
Length
8 nucleotides
Bulged bases
8GLP|1|L5|C|1214, 8GLP|1|L5|C|1215
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8GLP_043 not in the Motif Atlas
Geometric match to IL_4WF9_034
Geometric discrepancy: 0.3106
The information below is about IL_4WF9_034
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_52767.5
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
28

Unit IDs

8GLP|1|L5|C|1082
8GLP|1|L5|U|1083
8GLP|1|L5|C|1084
*
8GLP|1|L5|G|1213
8GLP|1|L5|C|1214
8GLP|1|L5|C|1215
8GLP|1|L5|C|1216
8GLP|1|L5|G|1217

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LF
60S ribosomal protein L7
Chain Lb
60S ribosomal protein L29

Coloring options:


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