IL_9Q2T_079
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2T_079 not in the Motif Atlas
- Homologous match to IL_8GLP_076
- Geometric discrepancy: 0.194
- The information below is about IL_8GLP_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 14
Unit IDs
9Q2T|1|5|C|1911
9Q2T|1|5|G|1912
9Q2T|1|5|C|1913
9Q2T|1|5|C|1914
9Q2T|1|5|C|1915
9Q2T|1|5|G|1916
9Q2T|1|5|A|1917
9Q2T|1|5|U|1918
*
9Q2T|1|5|G|2064
9Q2T|1|5|G|2065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7
- Chain O
- Large ribosomal subunit protein uL13
- Chain S
- eL20
- Chain f
- Large ribosomal subunit protein eL33
Coloring options: