IL_9Q2T_160
3D structure
- PDB id
- 9Q2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- UCCU*GUCA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9Q2T_160 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.3438
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9Q2T|1|5|U|4885
9Q2T|1|5|C|4886
9Q2T|1|5|C|4887
9Q2T|1|5|U|4888
*
9Q2T|1|5|G|4931
9Q2T|1|5|U|4932
9Q2T|1|5|C|4933
9Q2T|1|5|A|4934
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein eL6
- Chain M
- 60S ribosomal protein L14
Coloring options: