IL_9Q2T_197

3D structure

PDB id

9Q2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES in complex with Rabbit 80S ribosome with eEF2 and P site Ala-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9Q2T_197 not in the Motif Atlas

Homologous match to IL_9PN5_157

Geometric discrepancy: 0.2493

The information below is about IL_9PN5_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77718.1

Basepair signature

cWW-L-cSW-cWW

Number of instances in this motif group

11

Unit IDs

9Q2T|1|9|C|317
9Q2T|1|9|A|318
9Q2T|1|9|C|319
9Q2T|1|9|G|320
*
9Q2T|1|9|C|331
9Q2T|1|9|G|332
9Q2T|1|9|G|333

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

Large ribosomal subunit protein eL24